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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A11G1675 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bZIP | ||||||||
Protein Properties | Length: 200aa MW: 23021.9 Da PI: 7.7635 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 41 | 4.1e-13 | 65 | 122 | 5 | 62 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 ++ +r+++NReAArrsR RK++ ++ L v +L eN + +++ ++ + + ++e Gh_A11G1675 65 RKRKRMASNREAARRSRMRKQKHLDDLMGQVSQLAHENNQILANINITTQIYLNIEAE 122 5789***********************************9999998877777666655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 1.2E-15 | 61 | 125 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.404 | 63 | 110 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 4.6E-11 | 63 | 140 | No hit | No description |
Pfam | PF00170 | 4.6E-10 | 65 | 110 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 3.06E-12 | 65 | 117 | No hit | No description |
CDD | cd14702 | 2.99E-18 | 66 | 116 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 68 | 83 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence Send to blast |
MSPVLCEILL SGLMINSTLR RRTHLVQSFS VVFLYWFYVT GSSSSSATRR SSSSVEEFQQ 60 VLNERKRKRM ASNREAARRS RMRKQKHLDD LMGQVSQLAH ENNQILANIN ITTQIYLNIE 120 AENTVLRAQM AELSTRLQSL NEINDFISSN NGVFGYDHPN NYEADHDHHH HQVNIDTFMN 180 NPWGCFYGNQ PIIASADMIM |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 64 | 85 | RKRKRMASNREAARRSRMRKQK |
2 | 77 | 84 | RRSRMRKQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.10464 | 2e-43 | boll| leaf| ovule| stem |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00267 | DAP | Transfer from AT2G18160 | Download |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012491624.1 | 4e-98 | PREDICTED: ocs element-binding factor 1-like | ||||
TrEMBL | A0A0D2TI92 | 1e-126 | A0A0D2TI92_G | ||||
STRING | VIT_04s0023g02430.t01 | 8e-49 | (Vitis vinifera) | ||||
STRING | POPTR_0004s16560.1 | 7e-49 | (Populus trichocarpa) | ||||
STRING | POPTR_0005s25290.1 | 6e-49 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM501 | 28 | 154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G18160.1 | 7e-45 | basic leucine-zipper 2 |